sc.fiji.snt

Class SearchThread

java.lang.Object

java.lang.Thread

sc.fiji.snt.SearchThread

All Implemented Interfaces:

java.lang.Runnable, SearchInterface

Direct Known Subclasses:

FillerThread, TracerThread

public abstract class SearchThread
extends java.lang.Thread
implements SearchInterface

Implements a common thread that explores the image using a variety of strategies, e.g., to trace tubular structures or surfaces.

Author:

Mark Longair, Tiago Ferreira

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field and Description
static int	CANCELLED
static byte	CLOSED_FROM_GOAL
static byte	CLOSED_FROM_START
static java.lang.String[]	exitReasonStrings
static byte	FREE
static byte	OPEN_FROM_GOAL
static byte	OPEN_FROM_START
static int	OUT_OF_MEMORY
static int	PAUSED
static int	POINTS_EXHAUSTED
static int	RUNNING
static int	STOPPING
static int	SUCCESS
static int	TIMED_OUT

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
SearchThread(ij.ImagePlus imagePlus, float stackMin, float stackMax, boolean bidirectional, boolean definedGoal, boolean startPaused, int timeoutSeconds, long reportEveryMilliseconds)

Method Summary

Modifier and Type	Method and Description
void	addNode(SearchNode n, boolean fromStart)
void	addProgressListener(SearchProgressCallback callback)
void	drawProgressOnSlice(int plane, int currentSliceInPlane, sc.fiji.snt.TracerCanvas canvas, java.awt.Graphics g)
int	getThreadStatus()
void	pauseOrUnpause()
int	pointsConsideredInSearch()
void	printStatus()
void	reportFinished(boolean success)
void	reportThreadStatus()
void	requestStop()
void	run()

Methods inherited from class java.lang.Thread

activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface sc.fiji.snt.SearchInterface

getResult

Field Detail

OPEN_FROM_START

public static final byte OPEN_FROM_START

See Also:

Constant Field Values

CLOSED_FROM_START

public static final byte CLOSED_FROM_START

See Also:

Constant Field Values

OPEN_FROM_GOAL

public static final byte OPEN_FROM_GOAL

See Also:

Constant Field Values

CLOSED_FROM_GOAL

public static final byte CLOSED_FROM_GOAL

See Also:

Constant Field Values

FREE

public static final byte FREE

See Also:

Constant Field Values

RUNNING

public static final int RUNNING

See Also:

Constant Field Values

PAUSED

public static final int PAUSED

See Also:

Constant Field Values

STOPPING

public static final int STOPPING

See Also:

Constant Field Values

SUCCESS

public static int SUCCESS

CANCELLED

public static int CANCELLED

TIMED_OUT

public static int TIMED_OUT

POINTS_EXHAUSTED

public static int POINTS_EXHAUSTED

OUT_OF_MEMORY

public static int OUT_OF_MEMORY

exitReasonStrings

public static java.lang.String[] exitReasonStrings

Constructor Detail

SearchThread

public SearchThread(ij.ImagePlus imagePlus,
                    float stackMin,
                    float stackMax,
                    boolean bidirectional,
                    boolean definedGoal,
                    boolean startPaused,
                    int timeoutSeconds,
                    long reportEveryMilliseconds)

Method Detail

pointsConsideredInSearch

public int pointsConsideredInSearch()

addProgressListener

public void addProgressListener(SearchProgressCallback callback)

getThreadStatus

public int getThreadStatus()

requestStop

public void requestStop()

Specified by:

requestStop in interface SearchInterface

reportThreadStatus

public void reportThreadStatus()

reportFinished

public void reportFinished(boolean success)

pauseOrUnpause

public void pauseOrUnpause()

printStatus

public void printStatus()

run

public void run()

Specified by:

run in interface java.lang.Runnable

Overrides:

run in class java.lang.Thread

drawProgressOnSlice

public void drawProgressOnSlice(int plane,
                                int currentSliceInPlane,
                                sc.fiji.snt.TracerCanvas canvas,
                                java.awt.Graphics g)

Specified by:

drawProgressOnSlice in interface SearchInterface

addNode

public void addNode(SearchNode n,
                    boolean fromStart)