sc.fiji.snt

Class FillerThread

java.lang.Object

java.lang.Thread

sc.fiji.snt.SearchThread

sc.fiji.snt.FillerThread

All Implemented Interfaces:

java.lang.Runnable, SearchInterface

public class FillerThread
extends SearchThread

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class sc.fiji.snt.SearchThread

CANCELLED, CLOSED_FROM_GOAL, CLOSED_FROM_START, exitReasonStrings, FREE, OPEN_FROM_GOAL, OPEN_FROM_START, OUT_OF_MEMORY, PAUSED, POINTS_EXHAUSTED, RUNNING, STOPPING, SUCCESS, TIMED_OUT

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
FillerThread(ij.ImagePlus imagePlus, float stackMin, float stackMax, boolean startPaused, boolean reciprocal, double initialThreshold, long reportEveryMilliseconds)

Method Summary

Modifier and Type	Method and Description
void	drawProgressOnSlice(int plane, int currentSliceInPlane, sc.fiji.snt.TracerCanvas canvas, java.awt.Graphics g)
ij.ImagePlus	fillAsImagePlus(boolean realData)
static FillerThread	fromFill(ij.ImagePlus imagePlus, float stackMin, float stackMax, boolean startPaused, Fill fill)
float	getDistanceAtPoint(double xd, double yd, double zd)
Path	getResult()
float	getThreshold()
void	setSourcePaths(java.util.Collection<Path> newSourcePaths)
void	setThreshold(double threshold)

Methods inherited from class sc.fiji.snt.SearchThread

addNode, addProgressListener, getThreadStatus, pauseOrUnpause, pointsConsideredInSearch, printStatus, reportFinished, reportThreadStatus, requestStop, run

Methods inherited from class java.lang.Thread

activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

FillerThread

public FillerThread(ij.ImagePlus imagePlus,
                    float stackMin,
                    float stackMax,
                    boolean startPaused,
                    boolean reciprocal,
                    double initialThreshold,
                    long reportEveryMilliseconds)

Method Detail

getDistanceAtPoint

public float getDistanceAtPoint(double xd,
                                double yd,
                                double zd)

fromFill

public static FillerThread fromFill(ij.ImagePlus imagePlus,
                                    float stackMin,
                                    float stackMax,
                                    boolean startPaused,
                                    Fill fill)

setThreshold

public void setThreshold(double threshold)

getThreshold

public float getThreshold()

setSourcePaths

public void setSourcePaths(java.util.Collection<Path> newSourcePaths)

fillAsImagePlus

public ij.ImagePlus fillAsImagePlus(boolean realData)

drawProgressOnSlice

public void drawProgressOnSlice(int plane,
                                int currentSliceInPlane,
                                sc.fiji.snt.TracerCanvas canvas,
                                java.awt.Graphics g)

Specified by:

drawProgressOnSlice in interface SearchInterface

Overrides:

drawProgressOnSlice in class SearchThread

getResult

public Path getResult()