sc.fiji.snt

Class Fill

java.lang.Object

sc.fiji.snt.Fill

public class Fill
extends java.lang.Object

Defines a filled structure.

Author:

Mark Longair, Tiago Ferreira

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	Fill.Node Defines a node in a filled structure.

Field Summary

Fields

Modifier and Type	Field and Description
double	distanceThreshold
java.lang.String	metric
java.lang.String	spacing_units
double	x_spacing
double	y_spacing
double	z_spacing

Constructor Summary

Constructors

Constructor and Description
Fill()

Method Summary

Modifier and Type	Method and Description
void	add(int x, int y, int z, double distance, int previous, boolean open)
java.lang.String	getMetric()
double	getThreshold()
double	getVolume() Returns the Fill volume.
void	setMetric(java.lang.String metric)
void	setSourcePaths(Path[] newSourcePaths)
void	setSourcePaths(java.util.Set<Path> newSourcePaths)
void	setSpacing(double x_spacing, double y_spacing, double z_spacing, java.lang.String units)
void	setThreshold(double threshold)
void	writeNodesXML(java.io.PrintWriter pw)
void	writeXML(java.io.PrintWriter pw, int fillIndex)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

distanceThreshold

public double distanceThreshold

metric

public java.lang.String metric

x_spacing

public double x_spacing

y_spacing

public double y_spacing

z_spacing

public double z_spacing

spacing_units

public java.lang.String spacing_units

Constructor Detail

Fill

public Fill()

Method Detail

add

public void add(int x,
                int y,
                int z,
                double distance,
                int previous,
                boolean open)

setSourcePaths

public void setSourcePaths(Path[] newSourcePaths)

setSourcePaths

public void setSourcePaths(java.util.Set<Path> newSourcePaths)

setMetric

public void setMetric(java.lang.String metric)

getMetric

public java.lang.String getMetric()

setSpacing

public void setSpacing(double x_spacing,
                       double y_spacing,
                       double z_spacing,
                       java.lang.String units)

setThreshold

public void setThreshold(double threshold)

getThreshold

public double getThreshold()

writeNodesXML

public void writeNodesXML(java.io.PrintWriter pw)

writeXML

public void writeXML(java.io.PrintWriter pw,
                     int fillIndex)

getVolume

public double getVolume()

Returns the Fill volume. It assumes that the volume is just the number of sub-threshold nodes multiplied by x_spacing * y_spacing * z_spacing.

Returns:

the volume