sc.fiji.snt

Class TracerThread

java.lang.Object

java.lang.Thread

sc.fiji.snt.SearchThread

sc.fiji.snt.TracerThread

All Implemented Interfaces:

java.lang.Runnable, SearchInterface

public class TracerThread
extends SearchThread

SNT's default tracer thread: explores between two points in an image, doing an A* search with a choice of distance measures.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class sc.fiji.snt.SearchThread

CANCELLED, CLOSED_FROM_GOAL, CLOSED_FROM_START, exitReasonStrings, FREE, OPEN_FROM_GOAL, OPEN_FROM_START, OUT_OF_MEMORY, PAUSED, POINTS_EXHAUSTED, RUNNING, STOPPING, SUCCESS, TIMED_OUT

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
TracerThread(ij.ImagePlus imagePlus, float stackMin, float stackMax, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, boolean reciprocal, boolean singleSlice, features.ComputeCurvatures hessian, double multiplier)
TracerThread(ij.ImagePlus imagePlus, float stackMin, float stackMax, int timeoutSeconds, long reportEveryMilliseconds, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, boolean reciprocal, boolean singleSlice, features.ComputeCurvatures hessian, double multiplier, float[][] cachedTubeness, boolean useHessian)
TracerThread(SNT snt, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z)

Method Summary

Modifier and Type	Method and Description
Path	getResult()

Methods inherited from class sc.fiji.snt.SearchThread

addNode, addProgressListener, drawProgressOnSlice, getThreadStatus, pauseOrUnpause, pointsConsideredInSearch, printStatus, reportFinished, reportThreadStatus, requestStop, run

Methods inherited from class java.lang.Thread

activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

TracerThread

public TracerThread(SNT snt,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z)

TracerThread

public TracerThread(ij.ImagePlus imagePlus,
                    float stackMin,
                    float stackMax,
                    int timeoutSeconds,
                    long reportEveryMilliseconds,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    boolean reciprocal,
                    boolean singleSlice,
                    features.ComputeCurvatures hessian,
                    double multiplier,
                    float[][] cachedTubeness,
                    boolean useHessian)

TracerThread

public TracerThread(ij.ImagePlus imagePlus,
                    float stackMin,
                    float stackMax,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    boolean reciprocal,
                    boolean singleSlice,
                    features.ComputeCurvatures hessian,
                    double multiplier)

Method Detail

getResult

public Path getResult()