Uses of Class
sc.fiji.snt.util.SWCPoint

Packages that use SWCPoint

Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.analysis.graph	Classes for handling neuronal reconstructions as graphs
sc.fiji.snt.io	Classes for importing reconstructions into SNT.
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.

Uses of SWCPoint in sc.fiji.snt

Methods in sc.fiji.snt that return types with arguments of type SWCPoint

Modifier and Type	Method and Description
org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,org.jgrapht.graph.DefaultWeightedEdge>	Tree.getGraph() Assembles a DirectedGraph from this Tree.
java.util.Collection<SWCPoint>	Tree.getNodesAsSWCPoints()
java.util.List<SWCPoint>	PathAndFillManager.getSWCFor(java.util.Collection<Path> paths) Gets the list of SWCPoints associated with a collection of Paths.

Method parameters in sc.fiji.snt with type arguments of type SWCPoint

Modifier and Type	Method and Description
static PathAndFillManager	PathAndFillManager.createFromNodes(java.util.Collection<SWCPoint> nodes) Creates a PathAndFillManager instance from a collection of reconstruction nodes.
java.util.Map<java.lang.String,Tree>	PathAndFillManager.importNeurons(java.util.Map<java.lang.String,java.util.TreeSet<SWCPoint>> map, org.scijava.util.ColorRGB color, java.lang.String spatialUnit) Import neuron(s) as a collection of reconstruction nodes (SWC points)

Constructor parameters in sc.fiji.snt with type arguments of type SWCPoint

Constructor and Description
Tree(java.util.Collection<SWCPoint> nodes, java.lang.String label) Instantiates a Tree from a collection of reconstruction nodes.

Uses of SWCPoint in sc.fiji.snt.analysis.graph

Methods in sc.fiji.snt.analysis.graph that return types with arguments of type SWCPoint

Modifier and Type	Method and Description
static org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,org.jgrapht.graph.DefaultWeightedEdge>	GraphUtils.createGraph(java.util.Collection<SWCPoint> nodes, boolean assignDistancesToWeights) Creates a DirectedGraph from a collection of reconstruction nodes.
static org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,org.jgrapht.graph.DefaultWeightedEdge>	GraphUtils.createGraph(Tree tree) Creates a DirectedGraph from a Tree.

Method parameters in sc.fiji.snt.analysis.graph with type arguments of type SWCPoint

Modifier and Type	Method and Description
static org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,org.jgrapht.graph.DefaultWeightedEdge>	GraphUtils.createGraph(java.util.Collection<SWCPoint> nodes, boolean assignDistancesToWeights) Creates a DirectedGraph from a collection of reconstruction nodes.
static Tree	GraphUtils.createTree(org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,?> graph) Creates a Tree from a graph.

Uses of SWCPoint in sc.fiji.snt.io

Methods in sc.fiji.snt.io that return SWCPoint

Modifier and Type	Method and Description
SWCPoint	MouseLightQuerier.getSoma() Retrieves the soma (single-point representation) of the loaded neuron.

Methods in sc.fiji.snt.io that return types with arguments of type SWCPoint

Modifier and Type	Method and Description
static java.util.Map<java.lang.String,java.util.TreeSet<SWCPoint>>	MouseLightLoader.extractNodes(java.io.File jsonFile, java.lang.String compartment) Extracts reconstruction(s) from a JSON file.
java.util.TreeSet<SWCPoint>	MouseLightQuerier.getAxonNodes() Extracts the nodes of the axonal arbor of loaded neuron.
java.util.TreeSet<SWCPoint>	MouseLightQuerier.getDendriteNodes() Extracts the nodes of the dendritic arbor of loaded neuron.
java.util.TreeSet<SWCPoint>	MouseLightQuerier.getNodes() Extracts the nodes (single-point soma, axonal and dendritic arbor) of the loaded neuron.
java.util.TreeSet<SWCPoint>	MouseLightLoader.getNodes() Extracts the nodes (single-point soma, axonal and dendritic arbor) of the loaded neuron.
java.util.TreeSet<SWCPoint>	MouseLightQuerier.getNodes(java.lang.String compartment) Script-friendly method to extract the nodes of a compartment.
java.util.TreeSet<SWCPoint>	MouseLightLoader.getNodes(java.lang.String compartment) Script-friendly method to extract the nodes of a cellular compartment.

Uses of SWCPoint in sc.fiji.snt.util

Methods in sc.fiji.snt.util that return SWCPoint

Modifier and Type	Method and Description
SWCPoint	SWCPoint.getPreviousPoint() Returns the preceding node (if any)

Methods in sc.fiji.snt.util that return types with arguments of type SWCPoint

Modifier and Type	Method and Description
java.util.List<SWCPoint>	SWCPoint.getNextPoints() Returns the list holding the subsequent nodes in the reconstructed structure after this one.

Methods in sc.fiji.snt.util with parameters of type SWCPoint

Modifier and Type	Method and Description
int	SWCPoint.compareTo(SWCPoint o)
void	SWCPoint.setPreviousPoint(SWCPoint previousPoint) Sets the preceding node in the reconstruction

Method parameters in sc.fiji.snt.util with type arguments of type SWCPoint

Modifier and Type	Method and Description
static java.io.StringReader	SWCPoint.collectionAsReader(java.util.Collection<SWCPoint> points) Converts a collection of SWC points into a Reader.
static void	SWCPoint.flush(java.util.Collection<SWCPoint> points, java.io.PrintWriter pw) Prints a list of points as space-separated values.
void	BoundingBox.inferSpacing(java.util.Collection<SWCPoint> points) Infers the voxel spacing of this box from the inter-node distances of a Collection of SWCPoints.