sc.fiji.snt.analysis.graph

Class GraphUtils

java.lang.Object

sc.fiji.snt.analysis.graph.GraphUtils

public class GraphUtils
extends java.lang.Object

Method Summary

Modifier and Type	Method and Description
static org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,org.jgrapht.graph.DefaultWeightedEdge>	createGraph(java.util.Collection<SWCPoint> nodes, boolean assignDistancesToWeights) Creates a DirectedGraph from a collection of reconstruction nodes.
static org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,org.jgrapht.graph.DefaultWeightedEdge>	createGraph(Tree tree) Creates a DirectedGraph from a Tree.
static Tree	createTree(org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,?> graph) Creates a Tree from a graph.
static void	main(java.lang.String[] args)
static <V,E> java.awt.Window	show(org.jgrapht.Graph<V,E> graph) Displays a graph in a dedicated window featuring UI commands for interactive visualization and export options.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

createGraph

public static org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,org.jgrapht.graph.DefaultWeightedEdge> createGraph(java.util.Collection<SWCPoint> nodes,
                                                                                                                 boolean assignDistancesToWeights)

Creates a DirectedGraph from a collection of reconstruction nodes.

Parameters:

nodes - the collections of SWC nodes

assignDistancesToWeights - if true, inter-node Euclidean distances are used as edge weights

Returns:

the created graph

createGraph

public static org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,org.jgrapht.graph.DefaultWeightedEdge> createGraph(Tree tree)

Creates a DirectedGraph from a Tree.

Parameters:

tree - the Tree to be converted

Returns:

the created graph with edge weights corresponding to inter-node Euclidean distances

createTree

public static Tree createTree(org.jgrapht.graph.DefaultDirectedGraph<SWCPoint,?> graph)

Creates a Tree from a graph.

Parameters:

graph - the graph to be converted.

Returns:

the Tree, assembled from from the graph vertices

show

public static <V,E> java.awt.Window show(org.jgrapht.Graph<V,E> graph)

Displays a graph in a dedicated window featuring UI commands for interactive visualization and export options.

Type Parameters:

V - the graph vertex type

E - the graph edge type

Parameters:

graph - the graph to be displayed

Returns:

the assembled window

main

public static void main(java.lang.String[] args)