Uses of Interface
sc.fiji.snt.util.SNTPoint

Packages that use SNTPoint

Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.annotation	Classes handling neuropil annotations and atlases metadata.
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.
sc.fiji.snt.viewer	Visualization of reconstructions

Uses of SNTPoint in sc.fiji.snt

Methods in sc.fiji.snt that return SNTPoint

Modifier and Type	Method and Description
SNTPoint	Tree.getCentroid()

Uses of SNTPoint in sc.fiji.snt.annotation

Methods in sc.fiji.snt.annotation that return SNTPoint

Modifier and Type	Method and Description
static SNTPoint	ZBAtlasUtils.brainBarycentre() Returns the spatial centroid of the template brain.
static SNTPoint	VFBUtils.brainBarycentre(java.lang.String templateBrain) Returns the spatial centroid of an adult Drosophila template brain.
static SNTPoint	AllenUtils.brainCenter() Returns the spatial centroid of the Allen CCF.

Methods in sc.fiji.snt.annotation with parameters of type SNTPoint

Modifier and Type	Method and Description
static boolean	AllenUtils.isLeftHemisphere(SNTPoint point) Checks the hemisphere a reconstruction node belongs to.

Uses of SNTPoint in sc.fiji.snt.util

Classes in sc.fiji.snt.util that implement SNTPoint

Modifier and Type	Class and Description
class	PointInCanvas Defines a Point in a tracing canvas in pixel coordinates.
class	PointInImage Defines a Point in an image, a node of a traced Path.
class	SWCPoint Defines a node in an SWC reconstruction.

Methods in sc.fiji.snt.util with type parameters of type SNTPoint

Modifier and Type	Method and Description
static <T extends SNTPoint> T	SNTPoint.average(java.util.Collection<T> points)

Methods in sc.fiji.snt.util that return SNTPoint

Modifier and Type	Method and Description
SNTPoint	BoundingBox.getCentroid()

Method parameters in sc.fiji.snt.util with type arguments of type SNTPoint

Modifier and Type	Method and Description
void	BoundingBox.compute(java.util.Iterator<? extends SNTPoint> iterator) Computes a new positioning so that this box encloses the specified point cloud.

Uses of SNTPoint in sc.fiji.snt.viewer

Methods in sc.fiji.snt.viewer that return SNTPoint

Modifier and Type	Method and Description
SNTPoint	Annotation3D.getBarycentre() Returns the center of this annotation bounding box.
SNTPoint	OBJMesh.getCentroid(java.lang.String hemihalf) Returns the spatial centroid of the specified (hemi)mesh.

Methods in sc.fiji.snt.viewer that return types with arguments of type SNTPoint

Modifier and Type	Method and Description
java.util.Collection<? extends SNTPoint>	OBJMesh.getVertices() Returns the mesh vertices.
java.util.Collection<? extends SNTPoint>	OBJMesh.getVertices(java.lang.String hemihalf) Returns the mesh vertices.

Methods in sc.fiji.snt.viewer with parameters of type SNTPoint

Modifier and Type	Method and Description
Annotation3D	Viewer3D.annotatePoint(SNTPoint point, java.lang.String label) Adds an highlighting point annotation to this viewer.
void	Viewer3D.translate(java.util.Collection<java.lang.String> treeLabels, SNTPoint offset) Translates the specified collection of Trees.
void	OBJMesh.translate(SNTPoint offset) Translates the vertices of this mesh by the specified offset.
void	Viewer3D.translate(Tree tree, SNTPoint offset) Translates the specified Tree.

Method parameters in sc.fiji.snt.viewer with type arguments of type SNTPoint

Modifier and Type	Method and Description
Annotation3D	Viewer3D.annotateLine(java.util.Collection<? extends SNTPoint> points, java.lang.String label) Adds a line annotation to this viewer.
Annotation3D	Viewer3D.annotatePoints(java.util.Collection<? extends SNTPoint> points, java.lang.String label) Adds a scatter (point cloud) annotation to this viewer.
Annotation3D	Viewer3D.annotateSurface(java.util.Collection<? extends SNTPoint> points, java.lang.String label) Computes a Delaunay surface from a collection of points and adds it to the scene as an annotation.