Class | Description |
---|---|
CallLegacyShollPlugin |
Command to invoke the legacy "Sholl Analysis (Tracings)..." IJ1 plugin
|
LocalThicknessCmd |
Convenience command for running Fiji's "Local Thickness" plugin from SNT
|
PlotterCmd |
Implements Reconstruction Plotter, a command wrapper for interactively
plotting trees using
Viewer2D |
ROIExporterCmd |
Command providing a GUI for
RoiConverter and allowing export of
Path s to the IJ1 ROI Manager. |
ShollAnalysisPlugin | Deprecated |
ShollTracingsCmd |
Implements both the "Analyze:Sholl:Sholl Analysis (From Tracings)..." and
SNT's "Start Sholl Analysis..." commands
|
SkeletonizerCmd |
Convenience command for converting Paths into skeleton images
|
StrahlerCmd |
Command to perform Horton-Strahler analysis on a
Tree . |
TreeMapperCmd |
Command for color coding trees according to their properties using
TreeColorMapper with options to display result in Viewer2D
and Viewer3D |