| Class | Description |
|---|---|
| CallLegacyShollPlugin |
Command to invoke the legacy "Sholl Analysis (Tracings)..." IJ1 plugin
|
| LocalThicknessCmd |
Convenience command for running Fiji's "Local Thickness" plugin from SNT
|
| PlotterCmd |
Implements Reconstruction Plotter, a command wrapper for interactively
plotting trees using
Viewer2D |
| ROIExporterCmd |
Command providing a GUI for
RoiConverter and allowing export of
Paths to the IJ1 ROI Manager. |
| ShollAnalysisPlugin | Deprecated |
| ShollTracingsCmd |
Implements both the "Analyze:Sholl:Sholl Analysis (From Tracings)..." and
SNT's "Start Sholl Analysis..." commands
|
| SkeletonizerCmd |
Convenience command for converting Paths into skeleton images
|
| StrahlerCmd |
Command to perform Horton-Strahler analysis on a
Tree. |
| TreeMapperCmd |
Command for color coding trees according to their properties using
TreeColorMapper with options to display result in Viewer2D
and Viewer3D |