public class StrahlerCmd extends TreeAnalyzer
Tree
.BRANCH_ORDER, COMMON_MEASUREMENTS, INTER_NODE_DISTANCE, INTER_NODE_DISTANCE_SQUARED, LENGTH, MEAN_RADIUS, N_BRANCH_POINTS, N_NODES, NODE_RADIUS, VALUES, X_COORDINATES, Y_COORDINATES, Z_COORDINATES
Constructor and Description |
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StrahlerCmd(Tree tree) |
Modifier and Type | Method and Description |
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void |
compute() |
void |
displayPlot() |
java.util.Map<java.lang.Integer,java.lang.Double> |
getBranchPointMap() |
java.util.Map<java.lang.Integer,java.lang.Double> |
getCountMap() |
java.util.Map<java.lang.Integer,java.lang.Double> |
getLengthMap() |
java.util.Map<java.lang.Integer,java.lang.Double> |
getRatioMap() |
int |
getRootNumber() |
void |
run()
Generates detailed summaries in which measurements are grouped by SWC-type
flags
|
void |
updateAndDisplayTable()
Updates and displays the Analyzer table.
|
getBranchPoints, getCableLength, getNPaths, getParsedTree, getPrimaryBranches, getPrimaryLength, getPrimaryPaths, getStrahlerRootNumber, getTable, getTerminalBranches, getTerminalLength, getTips, ignoreSWCType, main, resetRestrictions, restrictToLength, restrictToNamePattern, restrictToOrder, restrictToSize, restrictToSWCType, setTable, setTable, summarize, summarize
public StrahlerCmd(Tree tree)
public void run()
TreeAnalyzer
run
in interface java.lang.Runnable
run
in class TreeAnalyzer
TreeAnalyzer.summarize(String, boolean)
public void compute()
public void updateAndDisplayTable()
TreeAnalyzer
updateAndDisplayTable
in class TreeAnalyzer
public void displayPlot()
public java.util.Map<java.lang.Integer,java.lang.Double> getCountMap()
compute()
has not been called.public java.util.Map<java.lang.Integer,java.lang.Double> getBranchPointMap()
compute()
has not been called.public int getRootNumber()
public java.util.Map<java.lang.Integer,java.lang.Double> getLengthMap()
compute()
has not been called.public java.util.Map<java.lang.Integer,java.lang.Double> getRatioMap()
compute()
has not been called.