Uses of Package
sc.fiji.snt

Packages that use sc.fiji.snt

Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.graph	Classes for handling neuronal reconstructions as graphs
sc.fiji.snt.analysis.sholl	Sholl analysis of Trees.
sc.fiji.snt.annotation	Classes handling neuropil annotations and atlases metadata.
sc.fiji.snt.gui	Customizations and commands for SNT's GUI.
sc.fiji.snt.io	Classes for importing reconstructions into SNT.
sc.fiji.snt.plugin	SNT add-ons as IJ2 commands
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.
sc.fiji.snt.viewer	Visualization of reconstructions

Classes in sc.fiji.snt used by sc.fiji.snt

Class and Description
Fill Defines a filled structure.
FillerThread
FillManagerUI Implements the Fill Manager dialog.
HessianCaller This class is responsible for initiating Heassian analysis on both the primary (main) and the secondary image.
NearPoint This class encapsulates the relationship between an arbitrary point (nearPoint.x,nearPoint.y,nearPoint.z) close to a particular point on a particular path.
Path This class represents a traced segment (i.e., a Path) in a reconstruction.
PathAndFillManager The PathAndFillManager is responsible for importing, handling and managing of Paths and Fills.
PathManagerUI Implements the Path Manager Dialog.
PathTransformer Classes transforming Paths should implement this interface.
SciViewSNT Bridges SNT to SciView, allowing Trees to be rendered as Scenery objects
SearchInterface Tracer classes implementing searches between two points should implement this interface.
SearchNode
SearchProgressCallback
SearchThread Implements a common thread that explores the image using a variety of strategies, e.g., to trace tubular structures or surfaces.
SNT Implements the SNT plugin.
SNTPrefs Class handling SNT preferences.
SNTUI Implements SNT's main dialog.
Tree Utility class to access a Collection of Paths.

Classes in sc.fiji.snt used by sc.fiji.snt.analysis

Class and Description
Path This class represents a traced segment (i.e., a Path) in a reconstruction.
Tree Utility class to access a Collection of Paths.

Classes in sc.fiji.snt used by sc.fiji.snt.analysis.graph

Class and Description
Tree Utility class to access a Collection of Paths.

Classes in sc.fiji.snt used by sc.fiji.snt.analysis.sholl

Class and Description
Tree Utility class to access a Collection of Paths.

Classes in sc.fiji.snt used by sc.fiji.snt.annotation

Class and Description
Tree Utility class to access a Collection of Paths.

Classes in sc.fiji.snt used by sc.fiji.snt.gui

Class and Description
HessianCaller This class is responsible for initiating Heassian analysis on both the primary (main) and the secondary image.
Path This class represents a traced segment (i.e., a Path) in a reconstruction.
PathManagerUI Implements the Path Manager Dialog.
SNT Implements the SNT plugin.

Classes in sc.fiji.snt used by sc.fiji.snt.io

Class and Description
Tree Utility class to access a Collection of Paths.

Classes in sc.fiji.snt used by sc.fiji.snt.plugin

Class and Description
Tree Utility class to access a Collection of Paths.

Classes in sc.fiji.snt used by sc.fiji.snt.util

Class and Description
Path This class represents a traced segment (i.e., a Path) in a reconstruction.
PathTransformer Classes transforming Paths should implement this interface.

Classes in sc.fiji.snt used by sc.fiji.snt.viewer

Class and Description
Tree Utility class to access a Collection of Paths.