sc.fiji.snt.gui

Class SigmaPalette

java.lang.Object

java.lang.Thread

sc.fiji.snt.gui.SigmaPalette

All Implemented Interfaces:

java.lang.Runnable

public class SigmaPalette
extends java.lang.Thread

Implements SNT 'Sigma wizard'. It relies heavily on java.awt because it extends IJ1's StackWindow. It was ported from SigmaPalette now deprecated.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
SigmaPalette(SNT snt, HessianCaller caller)

Method Summary

Modifier and Type	Method and Description
void	dismiss()
void	makePalette(int x_min, int x_max, int y_min, int y_max, int z_min, int z_max, double[] sigmaValues, int sigmasAcross, int sigmasDown, int initial_z) Displays the Sigma wizard in a separate thread.
void	run()

Methods inherited from class java.lang.Thread

activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SigmaPalette

public SigmaPalette(SNT snt,
                    HessianCaller caller)

Method Detail

makePalette

public void makePalette(int x_min,
                        int x_max,
                        int y_min,
                        int y_max,
                        int z_min,
                        int z_max,
                        double[] sigmaValues,
                        int sigmasAcross,
                        int sigmasDown,
                        int initial_z)

Displays the Sigma wizard in a separate thread.

Parameters:

x_min - image boundary for choice grid

x_max - image boundary for choice grid

y_min - image boundary for choice grid

y_max - image boundary for choice grid

z_min - image boundary for choice grid

z_max - image boundary for choice grid

sigmaValues - the desired range of sigma values for choice grid

sigmasAcross - the number of columns in choice grid

sigmasDown - the number of rows in choice grid

initial_z - the default z-position

dismiss

public void dismiss()

run

public void run()

Specified by:

run in interface java.lang.Runnable

Overrides:

run in class java.lang.Thread