Uses of Interface
sc.fiji.snt.annotation.BrainAnnotation

Packages that use BrainAnnotation

Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.annotation	Classes handling neuropil annotations and atlases metadata.
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.

Uses of BrainAnnotation in sc.fiji.snt

Methods in sc.fiji.snt that return BrainAnnotation

Modifier and Type	Method and Description
BrainAnnotation	Path.getNodeAnnotation(int pos) Returns the neuropil annotation associated with this node.

Methods in sc.fiji.snt with parameters of type BrainAnnotation

Modifier and Type	Method and Description
void	Path.setNodeAnnotation(BrainAnnotation annotation, int pos) Assigns an annotation to an existing node.

Uses of BrainAnnotation in sc.fiji.snt.annotation

Classes in sc.fiji.snt.annotation that implement BrainAnnotation

Modifier and Type	Class and Description
class	AllenCompartment Defines an Allen Reference Atlas (ARA) [Allen Mouse Common Coordinate Framework] annotation.

Uses of BrainAnnotation in sc.fiji.snt.util

Methods in sc.fiji.snt.util that return BrainAnnotation

Modifier and Type	Method and Description
BrainAnnotation	SNTPoint.getAnnotation()
BrainAnnotation	PointInImage.getAnnotation()
BrainAnnotation	SWCPoint.getAnnotation()

Methods in sc.fiji.snt.util with parameters of type BrainAnnotation

Modifier and Type	Method and Description
void	SNTPoint.setAnnotation(BrainAnnotation annotation) Assigns a neuropil annotation (e.g., atlas compartment) to this point.
void	PointInImage.setAnnotation(BrainAnnotation annotation)
void	SWCPoint.setAnnotation(BrainAnnotation annotation)