Package | Description |
---|---|
sc.fiji.snt.annotation |
Classes handling neuropil annotations and atlases metadata.
|
sc.fiji.snt.viewer |
Visualization of reconstructions
|
Modifier and Type | Method and Description |
---|---|
OBJMesh |
AllenCompartment.getMesh() |
OBJMesh |
BrainAnnotation.getMesh() |
static OBJMesh |
VFBUtils.getMesh(java.lang.String vfbId)
Retrieves the mesh associated with the specified VFB id.
|
static OBJMesh |
VFBUtils.getMesh(java.lang.String vfbId,
org.scijava.util.ColorRGB color)
Retrieves the mesh associated with the specified VFB id.
|
static OBJMesh |
ZBAtlasUtils.getRefBrain()
Retrieves the surface mesh (outline) of the zebrafish template brain.
|
static OBJMesh |
VFBUtils.getRefBrain(java.lang.String templateBrain)
Retrieves the surface mesh of an adult Drosophila template brain.
|
static OBJMesh |
AllenUtils.getRootMesh(org.scijava.util.ColorRGB color)
Retrieves the surface contours for the Allen Mouse Brain Atlas (CCF), bundled
with SNT.
|
Modifier and Type | Method and Description |
---|---|
OBJMesh |
Viewer3D.loadMesh(java.lang.String filePath,
org.scijava.util.ColorRGB color,
double transparencyPercent)
Loads a Wavefront .OBJ file.
|
OBJMesh |
Viewer3D.loadRefBrain(java.lang.String template)
Loads the surface mesh of a supported reference brain/neuropil.
|
Modifier and Type | Method and Description |
---|---|
boolean |
Viewer3D.addMesh(OBJMesh objMesh)
Loads a Wavefront .OBJ file.
|
boolean |
Viewer3D.removeMesh(OBJMesh mesh)
Removes the specified OBJ mesh.
|