Uses of Class
sc.fiji.snt.util.PointInImage

Packages that use PointInImage

Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.sholl	Sholl analysis of Trees.
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.

Uses of PointInImage in sc.fiji.snt

Methods in sc.fiji.snt that return PointInImage

Modifier and Type	Method and Description
PointInImage	Path.getEndJoinsPoint()
PointInImage	NearPoint.getNode()
PointInImage	Path.getNode(int pos) Gets the node at the specified position.
PointInImage	Tree.getRoot() Gets the first node of the main primary path of this tree
PointInImage	Tree.getSomaPosition() Gets the centroid position of all nodes tagged as Path.SWC_SOMA
PointInImage	Path.getStartJoinsPoint()
PointInImage	Path.nearestNodeTo(PointInImage node, double within) Gets the closest node associated with the specified node.
PointInImage	PathAndFillManager.AllPointsIterator.next()

Methods in sc.fiji.snt that return types with arguments of type PointInImage

Modifier and Type	Method and Description
java.util.Iterator<PointInImage>	PathAndFillManager.allPointsIterator()
java.util.List<PointInImage>	Path.findJunctions() Returns the nodes which are indicated to be a join (junction/branch point), either in this Path object, or any other that starts or ends on it.
java.util.List<PointInImage>	Tree.getNodes() Gets all the nodes (path points) forming this tree.

Methods in sc.fiji.snt with parameters of type PointInImage

Modifier and Type	Method and Description
void	Path.addNode(PointInImage point) Appends a node to this Path.
Path	SNT.autoTrace(java.util.List<PointInImage> pointList, PointInImage forkPoint) Automatically traces a path from a list of points and adds it to the active PathAndFillManager instance.
Path	SNT.autoTrace(PointInImage start, PointInImage end, PointInImage forkPoint) Automatically traces a path from a point A to a point B.
boolean	Path.contains(PointInImage pim) Check whether this Path contains the specified point
int	Path.getNodeIndex(PointInImage pim) Gets the first node index associated with the specified image coordinates.
void	Path.insertNode(int index, PointInImage point) Inserts a node at a specified position.
void	Path.moveNode(int index, PointInImage destination) Assigns a new location to the specified node.
PointInImage	Path.nearestNodeTo(PointInImage node, double within) Gets the closest node associated with the specified node.
void	Path.setEndJoin(Path other, PointInImage joinPoint)
void	Path.setStartJoin(Path other, PointInImage joinPoint)

Method parameters in sc.fiji.snt with type arguments of type PointInImage

Modifier and Type	Method and Description
Path	SNT.autoTrace(java.util.List<PointInImage> pointList, PointInImage forkPoint) Automatically traces a path from a list of points and adds it to the active PathAndFillManager instance.

Constructors in sc.fiji.snt with parameters of type PointInImage

Constructor and Description
NearPoint(PointInImage nearPoint, Path path, int indexInPath)

Uses of PointInImage in sc.fiji.snt.analysis

Methods in sc.fiji.snt.analysis that return types with arguments of type PointInImage

Modifier and Type	Method and Description
java.util.Set<PointInImage>	TreeAnalyzer.getBranchPoints() Gets the position of all the branch points in the analyzed tree.
java.util.Set<PointInImage>	TreeAnalyzer.getTips() Gets the position of all the tips in the analyzed tree.

Uses of PointInImage in sc.fiji.snt.analysis.sholl

Methods in sc.fiji.snt.analysis.sholl with parameters of type PointInImage

Modifier and Type	Method and Description
void	TreeParser.setCenter(PointInImage center) Sets the center of the profile.

Uses of PointInImage in sc.fiji.snt.util

Subclasses of PointInImage in sc.fiji.snt.util

Modifier and Type	Class and Description
class	PointInCanvas Defines a Point in a tracing canvas in pixel coordinates.
class	SWCPoint Defines a node in an SWC reconstruction.

Methods in sc.fiji.snt.util that return PointInImage

Modifier and Type	Method and Description
PointInImage	PointInCanvas.getScaledPoint() Converts the pixels coordinates of this point into a physical location if this point is associated with a Path.
PointInImage	BoundingBox.origin() Retrieves the origin of this box.
PointInImage	BoundingBox.originOpposite() Retrieves the origin opposite of this box.
PointInImage	PointInImage.transform(PathTransformer transformer)
PointInImage	BoundingBox.unscaledOrigin() Retrieves the origin of this box in unscaled ("pixel" units)
PointInImage	BoundingBox.unscaledOriginOpposite() Retrieves the origin opposite of this box in unscaled ("pixel" units)

Methods in sc.fiji.snt.util with parameters of type PointInImage

Modifier and Type	Method and Description
double	PointInImage.distanceSquaredTo(PointInImage o)
double	PointInImage.distanceTo(PointInImage o)
boolean	PointInImage.isSameLocation(PointInImage pim)
void	BoundingBox.setOrigin(PointInImage origin) Sets the origin for this box, i.e., the Box's SE vertex (lower left corner)