sc.fiji.snt.io

Class NeuroMorphoLoader

java.lang.Object

sc.fiji.snt.io.NeuroMorphoLoader

All Implemented Interfaces:

RemoteSWCLoader

public class NeuroMorphoLoader
extends java.lang.Object
implements RemoteSWCLoader

Importer for retrieving SWC data from neuromorpho.org.

Author:

Tiago Ferreira

Constructor Summary

Constructors

Constructor and Description
NeuroMorphoLoader()

Method Summary

Modifier and Type	Method and Description
void	enableSourceVersion(boolean enable)
java.io.BufferedReader	getReader(java.lang.String cellId) Gets the SWC data ('CNG version') associated with the specified cell ID as a reader
java.lang.String	getReconstructionURL(java.lang.String cellId) Gets the URL of the SWC file ('CNG version') associated with the specified cell ID.
Tree	getTree(java.lang.String cellId) Gets the collection of Paths for the specified cell ID
boolean	isDatabaseAvailable() Checks whether a connection to the NeuroMorpho database can be established.
static void	main(java.lang.String... args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NeuroMorphoLoader

public NeuroMorphoLoader()

Method Detail

isDatabaseAvailable

public boolean isDatabaseAvailable()

Checks whether a connection to the NeuroMorpho database can be established.

Specified by:

isDatabaseAvailable in interface RemoteSWCLoader

Returns:

true, if an HHTP connection could be established, false otherwise

getReconstructionURL

public java.lang.String getReconstructionURL(java.lang.String cellId)

Gets the URL of the SWC file ('CNG version') associated with the specified cell ID.

Specified by:

getReconstructionURL in interface RemoteSWCLoader

Parameters:

cellId - the ID of the cell to be retrieved

Returns:

the reconstruction URL, or null if cell ID was not found or could not be retrieved

getReader

public java.io.BufferedReader getReader(java.lang.String cellId)

Gets the SWC data ('CNG version') associated with the specified cell ID as a reader

Specified by:

getReader in interface RemoteSWCLoader

Parameters:

cellId - the ID of the cell to be retrieved

Returns:

the the character stream containing the data, or null if cell ID was not found or could not be retrieved

enableSourceVersion

public void enableSourceVersion(boolean enable)

getTree

public Tree getTree(java.lang.String cellId)

Gets the collection of Paths for the specified cell ID

Specified by:

getTree in interface RemoteSWCLoader

Parameters:

cellId - the ID of the cell to be retrieved

Returns:

the data ('CNG version') for the specified cell as a Tree, or null if data could not be retrieved

main

public static void main(java.lang.String... args)
                 throws java.io.IOException

Throws:

java.io.IOException