sc.fiji.snt.io

Class FlyCircuitLoader

java.lang.Object

sc.fiji.snt.io.FlyCircuitLoader

All Implemented Interfaces:

RemoteSWCLoader

public class FlyCircuitLoader
extends java.lang.Object
implements RemoteSWCLoader

Absurdly simple importer for retrieving SWC data from FlyCircuit.

Author:

Tiago Ferreira

Constructor Summary

Constructors

Constructor and Description
FlyCircuitLoader()

Method Summary

Modifier and Type	Method and Description
java.io.BufferedReader	getReader(java.lang.String cellId) Gets the SWC data associated with the specified cell ID as a reader
java.lang.String	getReconstructionURL(java.lang.String cellId) Gets the URL of the SWC file associated with the specified cell ID.
Tree	getTree(java.lang.String cellId) Gets the collection of Paths for the specified cell ID
boolean	isDatabaseAvailable() Checks whether a connection to the FlyCircuit database can be established.
static void	main(java.lang.String... args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FlyCircuitLoader

public FlyCircuitLoader()

Method Detail

isDatabaseAvailable

public boolean isDatabaseAvailable()

Checks whether a connection to the FlyCircuit database can be established.

Specified by:

isDatabaseAvailable in interface RemoteSWCLoader

Returns:

true, if an HHTP connection could be established, false otherwise

getReconstructionURL

public java.lang.String getReconstructionURL(java.lang.String cellId)

Gets the URL of the SWC file associated with the specified cell ID.

Specified by:

getReconstructionURL in interface RemoteSWCLoader

Parameters:

cellId - the ID of the cell to be retrieved

Returns:

the reconstruction URL

getReader

public java.io.BufferedReader getReader(java.lang.String cellId)

Gets the SWC data associated with the specified cell ID as a reader

Specified by:

getReader in interface RemoteSWCLoader

Parameters:

cellId - the ID of the cell to be retrieved

Returns:

the character stream containing the data, or null if cell ID was not found or could not be retrieved

getTree

public Tree getTree(java.lang.String cellId)

Gets the collection of Paths for the specified cell ID

Specified by:

getTree in interface RemoteSWCLoader

Parameters:

cellId - the ID of the cell to be retrieved

Returns:

the data for the specified cell as a Tree, or null if data could not be retrieved

main

public static void main(java.lang.String... args)