sc.fiji.snt

Class SNTUI

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

sc.fiji.snt.SNTUI

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class SNTUI
extends javax.swing.JDialog

Implements SNT's main dialog.

Author:

Tiago Ferreira

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.awt.Dialog

java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.BaselineResizeBehavior

Field Summary

Fields

Modifier and Type	Field and Description
static int	EDITING Flag specifying UI is currently waiting for user to edit a selected Path
static int	FITTING_PATHS Flag specifying UI is currently waiting for fitting operations to conclude
static int	LOADING Flag specifying UI is currently waiting for I/0 operations to conclude
static int	READY Flag specifying that image data is available and the UI is not waiting on any pending operations, thus 'ready to trace'
static int	RUNNING_CMD
static int	SNT_PAUSED Flag specifying all SNT are temporarily disabled (all user interactions are waived back to ImageJ)
static int	TRACING_PAUSED Flag specifying tracing functions are (currently) disabled.

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
SNTUI(SNT plugin) Instantiates SNT's main UI and associated PathManagerUI and FillManagerUI instances.

Method Summary

Modifier and Type	Method and Description
void	changeState(int newState) Changes this UI to a new state.
void	error(java.lang.String msg)
FillManagerUI	getFillManager() Gets the Fill Manager dialog.
PathManagerUI	getPathManager() Gets the Path Manager dialog.
Viewer3D	getReconstructionViewer(boolean initializeIfNull) Gets the Reconstruction Viewer.
sc.iview.SciView	getSciViewViewer(boolean initializeIfNull) Gets the SciView Viewer.
int	getState() Gets the current UI state.
boolean	isReady() Assesses whether the UI is blocked.
void	runCommand(java.lang.String cmd)
void	setEnableDebugMode(boolean enable) Enables/disables debug mode
void	showMessage(java.lang.String msg, java.lang.String title)
void	showStatus(java.lang.String msg, boolean temporary) Updates the status bar.

Methods inherited from class javax.swing.JDialog

getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, dispatchEvent, enable, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

READY

public static final int READY

Flag specifying that image data is available and the UI is not waiting on any pending operations, thus 'ready to trace'

See Also:

Constant Field Values

RUNNING_CMD

public static final int RUNNING_CMD

See Also:

Constant Field Values

LOADING

public static final int LOADING

Flag specifying UI is currently waiting for I/0 operations to conclude

See Also:

Constant Field Values

FITTING_PATHS

public static final int FITTING_PATHS

Flag specifying UI is currently waiting for fitting operations to conclude

See Also:

Constant Field Values

EDITING

public static final int EDITING

Flag specifying UI is currently waiting for user to edit a selected Path

See Also:

Constant Field Values

SNT_PAUSED

public static final int SNT_PAUSED

Flag specifying all SNT are temporarily disabled (all user interactions are waived back to ImageJ)

See Also:

Constant Field Values

TRACING_PAUSED

public static final int TRACING_PAUSED

Flag specifying tracing functions are (currently) disabled. Tracing is disabled when the user chooses so or when no valid image data is available (e.g., when no image has been loaded and a placeholder display canvas is being used)

See Also:

Constant Field Values

Constructor Detail

SNTUI

public SNTUI(SNT plugin)

Instantiates SNT's main UI and associated PathManagerUI and FillManagerUI instances.

Parameters:

plugin - the SNT instance associated with this UI

Method Detail

getState

public int getState()

Gets the current UI state.

Returns:

the current UI state, e.g., READY, RUNNING_CMD, etc.

isReady

public boolean isReady()

Assesses whether the UI is blocked.

Returns:

true if the UI is currently unblocked, i.e., ready for tracing/editing/analysis *

setEnableDebugMode

public void setEnableDebugMode(boolean enable)

Enables/disables debug mode

Parameters:

enable - true to enable debug mode, otherwise false

runCommand

public void runCommand(java.lang.String cmd)
                throws java.lang.IllegalArgumentException

Throws:

java.lang.IllegalArgumentException

changeState

public void changeState(int newState)

Changes this UI to a new state. Does nothing if newState is the current UI state

Parameters:

newState - the new state, e.g., READY, TRACING_PAUSED, etc.

error

public void error(java.lang.String msg)

showMessage

public void showMessage(java.lang.String msg,
                        java.lang.String title)

showStatus

public void showStatus(java.lang.String msg,
                       boolean temporary)

Updates the status bar.

Parameters:

msg - the text to displayed. Set it to null (or empty String) to reset the status bar.

temporary - if true and msg is valid, text is displayed transiently for a couple of seconds

getPathManager

public PathManagerUI getPathManager()

Gets the Path Manager dialog.

Returns:

the PathManagerUI associated with this UI

getFillManager

public FillManagerUI getFillManager()

Gets the Fill Manager dialog.

Returns:

the FillManagerUI associated with this UI

getReconstructionViewer

public Viewer3D getReconstructionViewer(boolean initializeIfNull)

Gets the Reconstruction Viewer.

Parameters:

initializeIfNull - it true, initializes the Viewer if it has not yet been initialized

Returns:

the reconstruction viewer

getSciViewViewer

public sc.iview.SciView getSciViewViewer(boolean initializeIfNull)

Gets the SciView Viewer.

Parameters:

initializeIfNull - it true, initializes the Viewer if it has not yet been initialized

Returns:

the SciView viewer